pymoo
Latest Version: pymoo==0.3.1

NSGA-II

The algorithm is implemented based on [3] [benchmark] [data] . A benchmark of the algorithm against the original C code can be found The algorithm follows the general outline of a genetic algorithm with a modified mating and survival selection. In NSGA-II, first, individuals are selected frontwise. By doing so, there will be the situation where a front needs to be split because not all individuals are allowed to survive. In this splitting front, solutions are selected based on crowding distance.

nsga2_survival

The crowding distance is basically the Manhatten Distance in the objective space. However, the extreme points are desired to be kept every generation and, therefore, get assigned a crowding distance of infinity.

nsga2_crowding

Furthermore, to increase some selection pressure NSGA-II uses a binary tournament mating selection. Each individual is first compared by rank and then crowding distance. There also exists a variant in the original C code where instead of using the rank the domination criterium between two solutions is used.

Example

[1]:
from pymoo.algorithms.nsga2 import NSGA2
from pymoo.factory import get_problem
from pymoo.optimize import minimize
from pymoo.visualization.scatter import Scatter

problem = get_problem("zdt2")

algorithm = NSGA2(pop_size=100, elimate_duplicates=True)

res = minimize(problem,
               algorithm,
               ('n_gen', 200),
               seed=1,
               verbose=False)

plot = Scatter()
plot.add(problem.pareto_front(), plot_type="line", color="black", alpha=0.7)
plot.add(res.F, color="red")
plot.show()

../_images/algorithms_nsga2_8_0.png

Moreover, we can customize NSGA-II to solve a problem with binary decision variable, for example ZDT5.

[2]:
from pymoo.algorithms.nsga2 import NSGA2
from pymoo.factory import get_problem, get_sampling, get_crossover, get_mutation
from pymoo.optimize import minimize
from pymoo.visualization.scatter import Scatter

problem = get_problem("zdt5")

algorithm = NSGA2(pop_size=100,
                  sampling=get_sampling("bin_random"),
                  crossover=get_crossover("bin_two_point"),
                  mutation=get_mutation("bin_bitflip"),
                  elimate_duplicates=True)

res = minimize(problem,
               algorithm,
               ('n_gen', 500),
               seed=1,
               verbose=False)


Scatter().add(res.F).show()


../_images/algorithms_nsga2_10_0.png

API

class pymoo.algorithms.nsga2.NSGA2(self, pop_size=100, sampling=FloatRandomSampling(), selection=TournamentSelection(func_comp=binary_tournament), crossover=SimulatedBinaryCrossover(eta=15, prob=0.9), mutation=PolynomialMutation(prob=None, eta=20), eliminate_duplicates=True, n_offsprings=None, **kwargs)
Parameters
pop_sizeint

The population sized used by the algorithm.

samplingSampling, Population, numpy.array

The sampling process defines the initial set of solutions which are the starting point of the optimization algorithm. Here, you have three different options by passing

(i) A Sampling implementation which is an implementation of a random sampling method.

(ii) A Population object containing the variables to be evaluated initially OR already evaluated solutions (F needs to be set in this case).

(iii) Pass a two dimensional numpy.array with (n_individuals, n_var) which contains the variable space values for each individual.

selectionSelection

This object defines the mating selection to be used. In an evolutionary algorithm each generation parents need to be selected to produce new offsprings using different recombination and mutation operators. Different strategies for selecting parents are possible e.g. selecting them just randomly, only in the neighborhood, using a tournament selection to introduce some selection pressure, …

crossoverCrossover

The crossover has the purpose of create offsprings during the evolution. After the mating selection the parents are passed to the crossover operator which will dependent on the implementation create a different number of offsprings.

mutationMutation

Some genetic algorithms rely only on the mutation operation. However, it has shown that increases the performance to perform a mutation after creating the offsprings through crossover as well. Usually the mutation operator needs to be initialized with a probability to be executed. Having a high probability of mutation will most of the time increase the diversity in the population.

eliminate_duplicatesbool

The genetic algorithm implementation has a built in feature that eliminates duplicates after merging the parent and the offspring population. If there are duplicates with respect to the current population or in the offsprings itself they are removed and the mating process is repeated to fill up the offsprings until the desired number of unique offsprings is met.

n_offspringsint (default: None)

Number of offspring that are created through mating. By default n_offsprings=None which sets the number of offsprings equal to the population size. By setting n_offsprings=1 a, so called, steady-state version of an algorithm can be achieved.